R

GEOquery to access GEO datasets

I was reading a paper Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells , and wanted to re-analyze the microarray data.\ In…

reproduce k-means clustering and heatmap

I asked this question in seqanswer and biostar

How to make a heatmap based on ChIP-seq data by R

update on 04/20/2016.\ I noticed that this post is the most frequently visited one. it has been almost 3 years\ since I wrote this post. Now, there are…

Very good R tutorial by Google developer

DESeq2 is now in Bioconductor

Thank you Simon and your team!

Using R and Bioconductor for proteomics data analysis

It will be very helpful if I can master some skill for proteomics data. Now, I am focusing on NGS data which is based on DNA and RNA sequences.

python and Bioconductor for differential gene expression and gene ontology analysis

This post demonstrates performing differential expression analysis of short read sequencing data using a combination of Python and the R statistical…