Format
h5ad (AnnData)
AnnData on disk: X, layers, obs, var, obsm, uns. Cells are rows, genes are columns, the transpose of the R convention.
Extensions: .h5ad · Coordinates: n/a · Specification
From h5ad (AnnData)
- How to Convert h5ad to Seurat object (Without Losing Your Metadata)
anndataR and capseuratconverter handle the transpose and slot mapping for you; deciding which layer actually becomes your counts slot is still on you.
To h5ad (AnnData)
No conversions to this format yet.