Format
10x HDF5 (filtered_feature_bc_matrix.h5)
Cell Ranger's single-file HDF5 matrix; the same content as MTX, read directly by Seurat's Read10X_h5 and Scanpy's read_10x_h5.
Extensions: .h5 · Coordinates: n/a · Specification
From 10x HDF5 (filtered_feature_bc_matrix.h5)
- How to Convert 10x HDF5 to Seurat object (and Why IDs Go Missing)
Read10X_h5 hands you a matrix with the wrong row names by default, and nobody notices until a marker gene lookup comes back empty.
To 10x HDF5 (filtered_feature_bc_matrix.h5)
No conversions to this format yet.