python packages for bioinformatics

Apr 3, 2013 1 min read

Originally published on my old Blogger blog on April 3, 2013. Read the original post and its comments.

HTSeq for high through put sequencing data
http://www-huber.embl.de/users/anders/HTSeq/doc/overview.html

Cogent
https://pypi.python.org/pypi/cogent

pygr
http://code.google.com/p/pygr/

pybedtools
http://pythonhosted.org/pybedtools/

TAMO for motif analysis
http://fraenkel.mit.edu/TAMO/TAMO_tutorial.html

Biopython
https://pypi.python.org/pypi/biopython/1.61

cruzdb
https://pypi.python.org/pypi/cruzdb/0.4

genomics python

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