8 Resources to study Transcription factor binding, enhancers and histone modification distribution

Nov 15, 2022 1 min read

Originally published on my old Blogger blog on November 15, 2022. Read the original post and its comments.

ENCODE https://www.encodeproject.org/

2. The International Human Epigenome Consortium (IHEC) epigenome data portal http://epigenomesportal.ca/ihec/index.html?as=1

3. Blueprint epigenome http://dcc.blueprint-epigenome.eu/#/home

4. EpiFactors http://epifactors.autosome.ru/ is a database for epigenetic factors, corresponding genes and products.

5. CistromeDB http://cistrome.org/db/#/ by Shirley Liu group

6. Remap https://remap2022.univ-amu.fr/ is a large scale integrative analysis of DNA-binding experiments for Homo sapiens, Mus musculus, Drosophila melanogaster and Arabidopsis thaliana transcriptional regulators.

7. ChIP-Atlas http://chip-atlas.org/ An integrative, comprehensive database to explore public Epigenetic dataset, including ChIP-Seq, DNase-Seq, ATAC-Seq, and Bisulfite-Seq data: ChIP-Atlas covers almost all public data archived in Sequence Read Archive of NCBI, EBI, and DDBJ with over 224,000 experiments.

8. Fantom5 https://fantom.gsc.riken.jp/5/