1/ http://rafalab.dfci.harvard.edu/pages/harvardx.html by Rafa
2/ https://github.com/quinlan-lab/applied-computational-genomics#course-lecture-slides
by Aaron Quinlan, the creator of bedtools and many other cool tools.
3/ https://www.bioinformaticsalgorithms.org/ You can find the video classes on Coursera
4/ http://www.personal.psu.edu/iua1/courses/2014-BMMB-852.html by Istvan Albert, the creator of [biostars](https://www.biostars.org/).
5/ Introduction to Bioinformatics and Computational Biology https://liulab-dfci.github.io/bioinfo-combio/ by @XShirleyLiu
glad to contribute a little myself.
6/ data carpentry workshops https://datacarpentry.org/lessons/#genomics-workshop I am honored to serve as the curriculum committee chair
7/ Computational Genomics: Applied Comparative Genomics https://github.com/schatzlab/appliedgenomics2018
8/ Introduction to Computational Biology https://biodatascience.github.io/compbio/ by Mike Love @mikelove
9/ [MIT Computational Biology: Genomes, Networks, Evolution, Health - Fall 2018 - 6.047/6.878/HST.507](https://www.youtube.com/playlist?list=PLypiXJdtIca6GBQwDTo4bIEDV8F4RcAgt) by Manolis Kellis
10/ An introduction to Applied Bioinformatics http://readiab.org/introduction.html Very nice book with python code.