Unix

Awk Command to Count Total, Unique, and the Most Abundant Read in a FASTQ file

I was reading through a paper on comparative ChIP-Seq when I found this awk gem that lets you get some very basic stats very quickly on next generation…

download all the stuff from a website by wget

I want to download all the stuff from a website

awk for simple text manipulation

let’s say you have a bed file (tab delimited):

Cool use of Unix paste with NGS sequences:FASTQ to FASTA

While browsing SeqAnswers.com today I came across a post where Uwe Appelt provided a couple of lines of Unix shell wizadry to solve some problem. What…

use linux commands to extract lines from a file by line number

many times we want to extract certain lines from a file

check file and folder size in linux

How to check file and folder size