https://divingintogeneticsandgenomics.com/tags/trimmomatic/ Recent content in Trimmomatic on Chatomics Hugo -- gohugo.io en-us © 2018 Ming 'Tommy' Tang Thu, 26 Jun 2014 07:06:00 -0700 https://divingintogeneticsandgenomics.com/archive/quality-control-of-your-fastq-file-my-first-post-after-i-got-my-phd/ Thu, 26 Jun 2014 07:06:00 -0700 https://divingintogeneticsandgenomics.com/archive/quality-control-of-your-fastq-file-my-first-post-after-i-got-my-phd/ I passed my defense on Tuesday, and now I am a PhD! what a long process, it took me six years. I've been enjoying the PhD experience though. OK, let me go back to this post. things to remember: 1) You must quality control your fastq files first by fastqc. Trim the adapters and low quality bases by trimmomatic. 2) The fastq files dumped from the SRA GEO repository are usually the raw sequence, you need to quality control them.