R

In my last blog post, I showed an example to use heatmap to represent discrete values. I am going to continue the theme to introduce heatmap to represent…

In many Genomic papers, you will see heatmaps. Heatmaps are of no mystery. It is a way to visualize the data a.k.a. using colors to represent values.…

If you ever wants to use R on the command line, now you have several opitions.

When structural variants are represented in bedpe format, each structural variant is represented as two linked breakpoints. Each breakpoint is represented…

see a post\ I downloaded some broadpeak data from UCSC and put them in a folder /Users/mtang1/projects/ENCODE_ChIPseq/data/\ I cut only first four columns…

I am going to demonstrate how to make Upset plot using UpSetR package for ChIP-seq peaks. After running a peak-calling method for 3 samples, you want to…

Let me demonstrate it with an example. Use the ToothGrowth data set in the ggplot2 library

I am back from the 1st summer Institute in statistics for big data held in the university of Washington. I have learned so much!

One of my former friends (a biologist who does not know much about computer) wants me to help her to get all the promoter sequences from the human genome.…

“central limit theorem (CLT) states that, given certain conditions, the arithmetic mean of a sufficiently large number of iterates of independent random…