https://divingintogeneticsandgenomics.com/tags/oncogene/ Recent content in Oncogene on Chatomics Hugo -- gohugo.io en-us © 2018 Ming 'Tommy' Tang Tue, 02 Jan 2018 11:00:00 -0800 https://divingintogeneticsandgenomics.com/archive/cancer-gene-census-copy-number/ Tue, 02 Jan 2018 11:00:00 -0800 https://divingintogeneticsandgenomics.com/archive/cancer-gene-census-copy-number/ Ming Tang January 2, 2018 Set up knitr will force changing current working directory: https://philmikejones.wordpress.com/2015/05/20/set-root-directory-knitr/ https://github.com/yihui/knitr/issues/277 or use the ezkintr package https://deanattali.com/blog/ezknitr-package/ library(knitr) library(here) ## here() starts at /Users/mtang1/projects/mixing_histology_lung_cancer root.dir<- here() opts_knit$set(root.dir = root.dir) read in the data I am going to check the COSMIC database on cancer genes. Specifically, I want to know which cancer-related genes are found amplified and which are deleted. The data can be downloaded from http://cancer.