https://divingintogeneticsandgenomics.com/tags/nas/ Recent content in NAs on Chatomics Hugo -- gohugo.io en-us © 2018 Ming 'Tommy' Tang Mon, 22 May 2017 13:43:00 -0700 https://divingintogeneticsandgenomics.com/archive/when-nas-are-not-nas/ Mon, 22 May 2017 13:43:00 -0700 https://divingintogeneticsandgenomics.com/archive/when-nas-are-not-nas/ Downloading data Using TCGAbiolinks, I downloaded RNAseq data for LUAD and LUSC library(TCGAbiolinks) library(SummarizedExperiment) # query_rna_LUAD.hg38 <- GDCquery(project = "TCGA-LUAD", data.category = "Transcriptome Profiling", # data.type = "Gene Expression Quantification", # workflow.type = "HTSeq - Counts") # # # query_rna_LUSC.hg38 <- GDCquery(project = "TCGA-LUSC", data.category = "Transcriptome Profiling", # data.type = "Gene Expression Quantification", # workflow.type = "HTSeq - Counts") # # GDCdownload(query_rna_LUAD.hg38, method = "client") # GDCdownload(query_rna_LUSC.hg38, method = "client") # # LUAD_rna_data <- GDCprepare(query_rna_LUAD.