https://divingintogeneticsandgenomics.com/tags/medip-seq/ Recent content in MeDIP-seq on Chatomics Hugo -- gohugo.io en-us © 2018 Ming 'Tommy' Tang Thu, 23 Jan 2014 12:39:00 -0800 https://divingintogeneticsandgenomics.com/archive/medip-seq-and-histone-modification-chip-seq-analysis/ Thu, 23 Jan 2014 12:39:00 -0800 https://divingintogeneticsandgenomics.com/archive/medip-seq-and-histone-modification-chip-seq-analysis/ I was reading a cell paper: Dnmt3L Antagonizes DNA Methylation at Bivalent Promoters and Favors DNA Methylation at Gene Bodies in ESCs http://www.sciencedirect.com.lp.hscl.ufl.edu/science/article/pii/S0092867413010878 I want to re-analyze the MeDIP-seq data and the histone modification ChIP-seq data. I downloaded the MeDIP-seq data here: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE44644 and the H3k4me3 and H3k27me3 ChIP-seq data here: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15519 The paper claimed that Dnmt3L maintains DNA hypomethylation at bivalent promoters ( with both H3k4me3 and H3k27me3 marks).