MACS

I want to use MACS2 call ChIP-seq peaks for 10 samples(each with IP and input control) with 4 different set of parameters. That’s a lot of commands to type!…

install MACS2: 06/11/2015 sudo pip -H install MACS2\ macs2 version:2.1.0.20150420\ install NCIS to estimate the scaling factor:\ Download the package here:\…

It has been a long time since I posted last time. I will be defending at the end of next month. So, I am busy with my thesis writing. Anyway, I do want to…

First, you need to get an idea of what is a bigwig file:

Our neighboring lab just generated some ChIP-exo data, (if you do not know the technique, look at this paper ) and the company did some analysis but not…