https://divingintogeneticsandgenomics.com/tags/id-mapping/ Recent content in Id mapping on Chatomics Hugo -- gohugo.io en-us © 2018 Ming 'Tommy' Tang Wed, 10 Sep 2014 09:53:00 -0700 https://divingintogeneticsandgenomics.com/archive/converting-gene-ids-using-bioconductor-with-biomart-and-annotation-packages/ Wed, 10 Sep 2014 09:53:00 -0700 https://divingintogeneticsandgenomics.com/archive/converting-gene-ids-using-bioconductor-with-biomart-and-annotation-packages/ I had a post using mygene to convert gene ids. Bioconductor can do the same job. I put a gist on github. View this gist on GitHub For more examples see posts from Dave Tang: http://davetang.org/muse/2013/12/16/bioconductor-annotation-packages/ http://davetang.org/muse/2013/05/23/using-the-bioconductor-annotation-packages/ http://davetang.org/muse/2013/11/25/thoughts-converting-gene-identifiers/ https://divingintogeneticsandgenomics.com/archive/mapping-gene-ids-with-mygene/ Wed, 03 Sep 2014 08:14:00 -0700 https://divingintogeneticsandgenomics.com/archive/mapping-gene-ids-with-mygene/ Mapping gene ids is one of the routine jobs for bioinformatics. I was aware of several ways to do it including Biomart. Update on 10/30/14, a mygene bioconductor package is online http://bioconductor.org/packages/release/bioc/html/mygene.html Recently I got to know mygene, a python wrapper for the mygene.info services to map gene ids. I found it very handy to convert gene ids. see a gist below. View this gist on GitHub To use it, cat input.