I have a bed file which contains peak information for a ChIP-seq data. I want to find the genes that are closest to these peaks.

we do a lot of work on overlapping genomic features.\ Bedtool is a great tool for this kind of task, but sometimes I want to implement it with python\ for…

Posted on January 18, 2013 by Davo

for manipulation of Genomic Intervals\ # you can use Galaxy ,\ #Bedtools \ #or Bioconductor package GenomicRanges #\ #python package HTSeq