FPKM

RPKM/FPKM, TPM and raw counts for RNA-seq

There was a hot discussion that RPKM should not be used in the RNA-seq analysis:\ blahah404 Woohoo - death to FPKM and RPKM

FPKMs and counts compared for RNA-seq data

A very nice article comparing FPKMs and raw counts in RNA-seq data analysis