https://divingintogeneticsandgenomics.com/tags/eland/ Recent content in Eland on Chatomics Hugo -- gohugo.io en-us © 2018 Ming 'Tommy' Tang Sat, 01 Jun 2013 16:40:00 -0700 https://divingintogeneticsandgenomics.com/archive/convert-eland-sorted-txt-to-bam-file/ Sat, 01 Jun 2013 16:40:00 -0700 https://divingintogeneticsandgenomics.com/archive/convert-eland-sorted-txt-to-bam-file/ I downloaded a human ChIP-seq data set mapped to hg18 from NCBI GEO. it is in Eland sorted.txt format, I want to convert it to bam file for some downstream analysis. a google search: http://www.biostars.org/p/3121/ I followed the link to http://genomewiki.ucsc.edu/index.php/ABRF2010_Tutorial the export2sam.pl script in the samtool is what I need. I downloaded samtools-0.1.8 and found the script in the misc folder. but I got errors when I tried to convert it: