https://divingintogeneticsandgenomics.com/tags/cpg/ Recent content in CpG on Chatomics Hugo -- gohugo.io en-us © 2018 Ming 'Tommy' Tang Wed, 11 Dec 2013 20:51:00 -0800 https://divingintogeneticsandgenomics.com/archive/tet1-enrichment-at-cpg-rich-promoters/ Wed, 11 Dec 2013 20:51:00 -0800 https://divingintogeneticsandgenomics.com/archive/tet1-enrichment-at-cpg-rich-promoters/ Continue with my last post GEOquery to access GEO datasets, I am going to analyze the Tet1 ChIP-seq data in the paper Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells. To reproduce fig1, I have to group the promoters into CpG-rich and CpG-poor promoters first. Get the CpG island bed file and the refseq gene table first. I got the file from UCSC table browser http://genome.