https://divingintogeneticsandgenomics.com/tags/count-reads-at-features/ Recent content in Count reads at features on Chatomics Hugo -- gohugo.io en-us © 2018 Ming 'Tommy' Tang Sat, 01 Jun 2013 17:16:00 -0700 https://divingintogeneticsandgenomics.com/archive/count-chip-seq-rna-seq-counts-at-features/ Sat, 01 Jun 2013 17:16:00 -0700 https://divingintogeneticsandgenomics.com/archive/count-chip-seq-rna-seq-counts-at-features/ several tools are: subread http://subread.sourceforge.net/ http://bioinf.wehi.edu.au/featureCounts/ Bedtools genomecov http://bedtools.readthedocs.org/en/latest/content/tools/genomecov.html HTseq: http://www-huber.embl.de/users/anders/HTSeq/doc/count.html Homer: http://biowhat.ucsd.edu/homer/ngs/quantification.html