https://divingintogeneticsandgenomics.com/tags/chip-exo/ Recent content in ChIP-exo on Chatomics Hugo -- gohugo.io en-us © 2018 Ming 'Tommy' Tang Sat, 16 Nov 2013 07:58:00 -0800 https://divingintogeneticsandgenomics.com/archive/chip-exo-data-analysis/ Sat, 16 Nov 2013 07:58:00 -0800 https://divingintogeneticsandgenomics.com/archive/chip-exo-data-analysis/ Our neighboring lab just generated some ChIP-exo data, (if you do not know the technique, look at this paper http://www.ncbi.nlm.nih.gov/pubmed/23026909) and the company did some analysis but not what they want. The bedgraph files generated by the company were separated for plus strand and minus strand. They want just peak files like in the ChIP-seq experiment. I was aware of several software can be used to deal with this type of data: