https://divingintogeneticsandgenomics.com/tags/blast/ Recent content in Blast on Chatomics Hugo -- gohugo.io en-us © 2018 Ming 'Tommy' Tang Fri, 25 Jul 2014 10:53:00 -0700 https://divingintogeneticsandgenomics.com/archive/run-a-local-blast/ Fri, 25 Jul 2014 10:53:00 -0700 https://divingintogeneticsandgenomics.com/archive/run-a-local-blast/ I was checking the quality of a ChIP-seq fastq with fastqc, and the overrepresented sequence showed that the data contain Illumina Single End Adapter 1 contamination. I have a file which contains all the possible illumina library sequences in fasta format (got from here), and I manually looked it and found that the single End Adapter 1 sequence did not match the report. I then was wondering which sequence is the contamination.