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Cancer-specific innate and adaptive immune rewiring drives resistance to PD-1 blockade in classic Hodgkin lymphoma

The tidyomics ecosystem: Enhancing omic data analyses

A community challenge to predict clinical outcomes after immune checkpoint blockade in non-small cell lung cancer

Embracing the command line: my unexpected career in computational biology

Monkeybread: A Python toolkit for the analysis of cellular niches in single-cell resolution spatial transcriptomics data

Tutorial: integrative computational analysis of bulk RNA-sequencing data to characterize tumor immunity using RIMA

Comprehensive Characterizations of Immune Receptor Repertoire in Tumors and Cancer Immunotherapy Studies

Immunogenomic intertumor heterogeneity across primary and metastatic sites in a patient with lung adenocarcinoma

The histologic phenotype of lung cancers may be driven by transcriptomic features rather than genomic characteristics

Fast alignment and preprocessing of chromatin profiles with Chromap