Snakemake is a python extension for writing workflows. Genomics data processing usually requires bundling many different tools to reach a stage that is ready for downstream analysis.
I have been using snakemake writing workflows for various genomic and epigenomic datasets.
The DNAseq Snakemake pipeline is the most complicated workflow I have written so far. I will need to think about refining it, modulizing it and adding conda env support. Eventually, I will need to put all the snakemake workflows togther using something like snakeparse
