Python

My opinionated selection of books/urls for bioinformatics/data science curriculum

There was a paper on this topic: A New Online Computational Biology Curriculum. I am going to provide a biased list below (I have read most of the books if not all). I say it is biased because you will see many books of R are from Hadely Wickham. I now use tidyverse most of the time. Unix I suggest people who want to learn bioinformatics starting to learn unix commands first.

Split a 10xscATAC bam file by cluster

I want to split the PBMC scATAC bam from 10x by cluster id. So, I can then make a bigwig for each cluster to visualize in IGV. The first thing I did was googling to see if anyone has written such a tool (Do not reinvent the wheels!). People have done that because I saw figures from the scATAC papers. I just could not find it. Maybe I need to refine my googling skills.