Python

To not miss a post like this, sign up for my newsletter to learn computational biology and bioinformatics. The problem df<- data.frame(id = c(1,2,3), value = c('x,y', 'z,w', 'a')) df #> id value #> 1 1 x,y #> 2 2 z,w #> 3 3 a we want to put x,y in the first row into two rows: 1, x 1, y and put z,w into two rows too. solution with R There is a neat function separate_rows that does exactly this in tidyr package:

There was a paper on this topic: A New Online Computational Biology Curriculum. I am going to provide a biased list below (I have read most of the books if not all). I say it is biased because you will see many books of R are from Hadely Wickham. I now use tidyverse most of the time. Unix I suggest people who want to learn bioinformatics starting to learn unix commands first.

I want to split the PBMC scATAC bam from 10x by cluster id. So, I can then make a bigwig for each cluster to visualize in IGV. The first thing I did was googling to see if anyone has written such a tool (Do not reinvent the wheels!). People have done that because I saw figures from the scATAC papers. I just could not find it. Maybe I need to refine my googling skills.